Publications
2020 to Present
Lee J, Chatterjee B, Oh N, Saha D, Lu Y, Bartholomew B, Ishak CA. J Vis Exp. 2024 Dec 13;(214). doi: 10.3791/67359.PMID: 39760380
Shukla S, Paul S, Garcia J, Zhong Y, Juste SS, Beauchemin K, Bartholomew B. Nucleic Acids Res. 2024 Dec 16:gkae1187. doi: 10.1093/nar/gkae1187. Online ahead of print. PMID: 39676660 (See more about this story in this MD Anderson press release)
Saha D, Animireddy S, Lee J, Thommen A, Murvin MM, Lu Y, Calabrese MJ, Bartholomew B. Mol Cell. 2024 May 16;84(10):1855-1869.e5.
Saha D, Animireddy S, Bartholomew B. Biochem Soc Trans. 2024 Apr 24;52(2):603-616.
Saha D, Hailu S, Hada A, Lee J, Luo J, Ranish JA, Lin YC, Feola K, Persinger J, Jain A, Liu B, Lu Y, Sen P, Bartholomew B. Nat Commun. 2023 Aug 4;14(1):4682.
Bhardwaj SK, Hailu SG, Olufemi L, Brahma S, Kundu S, Hota SK, Persinger J, Bartholomew B. . Nat Commun. 2020 Nov 20;11(1):5913.
Preprint: Saha D, Animireddy S, Lee J, Lin Y-c, Feola K, Jain AK, Lu Y, Liu B, Bartholomew B. An RNA binding module of SWI/SNF is required for activation of cell-type specific enhancers and super-enhancers in early development. bioRxiv. 2022 Sep 6 doi:
Preprint: Bartholomew B, Shukla S, Ngubo M, Paul S, Persinger J, Brahma S. Res Sq [Preprint]. 2023 Oct 30:rs.3.rs-3443329.
Earlier Publications
2015¨C2019
Hada A, Hota SK, Luo J, Lin YC, Kale S, Shaytan AK, Bhardwaj SK, Persinger J, Ranish J, Panchenko AR, Bartholomew B. . Cell Rep. 2019 Jul 2;28(1):282-294.e6.
He W, Zhang L, Villarreal OD, Fu R, Bedford E, Dou J, Patel AY, Bedford MT, Shi X, Chen T, Bartholomew B, Xu H. Nat Commun. 2019 Oct 4;10(1):4541.
Paul S, Bartholomew B. . Biochem Soc Trans. 2018 Dec 17;46(6):1423-1430.
Brahma S, Ngubo M, Paul S, Udugama M, Bartholomew B. . Nat Commun. 2018 Aug 17;9(1):3309.
Meng H, Bartholomew B. J Biol Chem. 2018 Sep 7;293(36):13786-13794. Review.
Bartholomew B. J Biol Chem. 2017 Oct 13;292(41):17156-17157
Brahma S, Udugama MI, Kim J, Hada A, Bhardwaj SK, Hailu SG, Lee TH, Bartholomew B. . Nat Commun. 2017 Jun 12;8:15616.
Sen P, Luo J, Hada A, Hailu SG, Dechassa ML, Persinger J, Brahma S, Paul S, Ranish J, Bartholomew B. . Cell Rep. 2017 Feb 28;18(9):2135-2147.
Prasad R, D'Arcy S, Hada A, Luger K, Bartholomew B. . Mol Cell Biol. 2016 Aug 12;36(17):2262-7.
Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X. Elife. 2016 Feb 19;5. pii: e10051.
Lafon A, Taranum S, Peitrocola F, Dingli F, Loew D, Brahma S, Bartholomew B, Papmichos-Chronakis M. Mol Cell. 2015 Dec 3;60(5):784-96.
Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poiier MG, Bartholomew B. Mol Cell Biol. 2015 Dec;35(23):4083-92.
Li M, Hada A, Sen P, Olufemi L, Hall MA, Smith BY, Forth S, McKnight JN, Patel A, Bowman GD, Bartholomew B, Wang MD. Elife. 2015 Jun 5;4.
Kim SA, Chatterjee N, Jennings MJ, Bartholomew B, Tan S. Nucleic Acids Res. 2015 May 26;43(10):4868-80.
Kapoor P, Bao Y, Xiao J, Luo J, Shen J, Persinger J, Peng G, Ranish J, Bartholomew B, Shen X. . Genes Dev. 2015 Mar 15;29(6):591-602.
2010¨C2014
Creamer KM, Job G, Shankar S, Neale GA, Lin YC, Bartholomew B, Partridge JF. . Mol Cell Biol. 2014 Jun;34(11):2046-61.
Bartholomew B. . Annu Rev Biochem. 2014;83:671-96.
Bartholomew B. . Curr Opin Struct Biol. 2014 Feb;24:150-5.
Bartholomew B. Nat Struct Mol Biol. 2013 Apr;20(4):405-7.
Deindl S, Hwang WL, Hota SK, Blosser TR, Prasad P, Bartholomew B, Zhuang X. . Cell. 2013 Jan 31;152(3):442-52.
Hota SK, Bhardwaj SK, Deindl S, Lin YC, Zhuang X, Bartholomew B (2013). at Struct Mol Biol. 2013 Feb;20(2):222-9
Sen P, Vivas P, Dechassa ML, Mooney AM, Poirier MG, Bartholomew B. . Mol Cell Biol. 2013 Jan;33(2):360-70.
Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, and Bartholomew B. Nucleic Acids Res. 2012 May;40(10):4412-21.
Darst RP, Pardo CE, Pondugula S, Gangaraju VK, Nabilsi NH, Bartholomew B, Kladde MP. . Methods Mol Biol. 2012;833:125-41
Hota SK, Dechassa ML, Prasad P, Bartholomew B. . Methods Mol Biol. 2012;809:381-409.
Hota SK, Bartholomew B. Methods Mol Biol. 2012;809:367-80.
Sen P, Ghosh S, Pugh BF, Bartholomew B. . Nucleic Acids Res. 2011 Nov;39(21):9155-66.
Chatterjee N, Sinha D, Lemma-Dechassa M, Tan S, Shogren-Knaak MA, Bartholomew B. . Nucleic Acids Res. 2011 Oct;39(19):8378-91.
Hota SK, Bartholomew B. . Biochim Biophys Acta. 2011 Sep;1809(9):476-87.
North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG. . Nucleic Acids Res. 2011 Aug;39(15):6465-74.
Gaykalova DA, Nagarajavel V, Bondarenko VA, Bartholomew B, Clark DJ, Studitsky VM. . Nucleic Acids Res. 2011 May;39(9):3520-8.
Udugama M, Sabri A, Bartholomew B. . Mol Cell Biol. 2011 Feb;31(4):662-73.
Dechassa ML, Sabri A, Pondugula S, Kassabov SR, Chatterjee N, Kladde MP, Bartholomew B. . Mol Cell. 2010 May 28;38(4):590-602.
Prasad P, Bartholomew B. Epigenetics. 2010 May 16;5(4):282-6.
2005¨C2009
Gangaraju VK, Prasad P, Srour A, Kagalwala MN, Bartholomew B. . Mol Cell. 2009 Jul 10;35(1):58-69.
Ransom M, Williams SK, Dechassa ML, Das C, Linger J, Adkins M, Liu C, Bartholomew B, JK Tyler. . J Biol Chem. 2009 Aug 28;284(35):23461-71.
Persinger J, Bartholomew B. Methods Mol Biol. 2009;543:453-74.
Dechassa ML, Zhang B, Horowitz-Scherer R, Persinger J, Woodcock CL, Peterson CL, Bartholomew B. Mol Cell Biol. 2008 Oct;28(19):6010-21.
Dang W, Bartholomew B. . Mol Cell Biol. 2007 Dec;27(23):8306-17.
Dang W, Kagalwala MN, Bartholomew B. . J Biol Chem. 2007 Jul 6;282(27):19418-25.
Gangaraju VK, Bartholomew B. Mutat Res. 2007 May 1;618(1-2):3-17
Gangaraju VK, Bartholomew B. Mol Cell Biol. 2007 Apr;27(8):3217-25.
Dang W, Kagalwala MN, Bartholomew B. . Mol Cell Biol. 2006 Oct;26(20):7388-96.
Zofall M, Persinger J, Kassabov SR, Bartholomew B. . Nat Struct Mol Biol. 2006 Apr;13(4):339-46.
2000¨C2004
Zofall M, Persinger J, Bartholomew B. . Mol Cell Biol. 2004 Nov;24(22):10047-57.
Auty R, Steen H, Myers LC, Persinger J, Bartholomew B, Gygi SP, Buratowski S. . J Biol Chem. 2004 Nov 26;279(48):49973-81.
Kagalwala MN, Glaus BJ, Dang W, Zofall M, Bartholomew B. . EMBO J. 2004 May 19;23(10):2092-104.
Kassabov SK, Zhang B, Persinger J, Bartholomew B. . Mol Cell. 2003 Feb;11(2):391-403.
Vary JC Jr, Gangaraju VK, Qin J, Landel CC, Kooperberg C, Bartholomew B, Tsukiyama T. . Mol Cell Biol. 2003 Jan;23(1):80-91.
Kassabov SK, Henry NH, Zofall M, Tsukiyama T, Bartholomew B. . Mol Cell Biol. 2002 Nov;22(21):7524-34.
Persinger J, Bartholomew B. . Methods Mol Biol. 2001;148:363-81.
Sengupta SM, VanKanegan M, Persinger J, Logie C, Cairns BR, Peterson CL, Bartholomew B. . J Biol Chem. 2001 Apr 20;276(16):12636-44.
Zofall M, Bartholomew B. . Nucleic Acids Res. 2000 Nov 1;28(21):4382-90.
1995¨C1999
Sengupta SM, Persinger J, Bartholomew B, Peterson CL. . Methods. 1999 Nov;19(3):434-46.
Persinger J, Sengupta SM, Bartholomew B. . Mol Cell Biol. 1999 Jul;19(7):5218-34.
Michelson RJ, Collard MW, Ziemba AJ, Persinger J, Bartholomew B, Huggenvik JI. J Biol Chem. 1999 Oct 22;274(43):30510-9.
Tate JJ, Persinger J, Bartholomew B. . Nucleic Acids Res. 1998 Mar 15;26(6):1421-6.
Radebaugh CA, Gong X, Bartholomew B, Paule MR. J Biol Chem. 1997 Feb 7;272(6):3141-4.
Persinger J, Bartholomew B. . J Biol Chem. 1996 Dec 20;271(51):33039-46.
Pruss D, Bartholomew B, Persinger J, Hayes J, Arents G, Moudrianakis EN, Wolffe AP. . Science. 1996 Oct 25;274(5287):614-7.
Powell W, Bartholomew B, Rienes D. J Biol Chem. 1996 Sep 13;271(37):22301-4.
Lannutti BJ, Persinger J, Bartholomew B. Biochemistry. 1996 Jul 30;35(30):9821-31.
Bartholomew B, Tinker RL, Kassavetis GA, Geiduschek EP. Methods Enzymol. 1995;262:476-94.
Pre-1995
Bartholomew B, Braun BR, Kassavetis GA, Geiduschek EP. . J Biol Chem. 1994 Jul 8;269(27):18090-5.
Bartholomew B, Durkovich D, Kassavetis GA, Geiduschek EP. . Mol Cell Biol. 1993 Feb;13(2):942-52.
Braun BR, Bartholomew B, Kassavetis GA, Geiduschek EP. J Mol Biol. 1992 Dec 20;228(4):1063-77.
Bartholomew B, Kassavetis GA, Geiduschek EP. Mol Cell Biol. 1991 Oct;11(10):5181-9.
Kassavetis GA, Bartholomew B, Blanco JA, Johnson TE, Geiduschek EP. . Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7308-12.
Bartholomew B, Kassavetis GA, Braun BR, Geiduschek EP. . EMBO J. 1990 Jul;9(7):2197-205
Bartholomew B, Meares CF, Dahmus ME. . J Biol Chem. 1990 Mar 5;265(7):3731-7.
Bartholomew B, Dahmus ME, Meares CF. J Biol Chem. 1986 Oct 25;261(30):14226-31.
Book Chapters
- Olefumi L and Bartholomew B. (2012) ¡°Chromatin Remodeling¡± Encyclopedia of Genetics 2nd Edition.
- Sen P, Chatterjee N and Bartholomew B. (2011) ¡°SWI/SNF Chromatin Remodeling Complex¡± in Encyclopedia of Signaling Molecules, Springer Publishers.
- Persinger J and Bartholomew B. (2009) edited by T. Moss and B. Leblanc in "DNA-Protein Interactions: Principles and Protocols" 3rd Edition. Site-directed DNA Crosslinking of Large Multi-subunit Protein-DNA Complexes.
- Chatterjee N, Sen P and Bartholomew B. (2008) ¡°The SWI/SNF and RSC Nucleosome Remodeling Complexes¡± in Handbook of Cell Signaling, Publisher Elsevier Inc.
- Kassabov SK and Bartholomew B. (2004) Methods Enzymol. 375, 193-211. ¡°Site-Directed Histone-DNA Contact mapping for Analysis of Nucleosome Dynamics High-resolution Mapping of Changes in Histone-DNA Contacts of Nucleosomes Remodeled by ISW2¡±. In Chromatin and Chromatin Remodeling, Eds. C.D. Allis & C. Wu.
- Persinger J, and Bartholomew B. (2000) edited by T. Moss in "Methods in Molecular Biology: Protein-DNA Interaction Protocols". Site-specific DNA photoaffinity labeling of RNA polymerase III transcription complexes.
- Kassavetis GA, Bardeleben C, Bartholomew B, Braun BR, Joazeiro CA, Pisano M, Geiduschek EP (1994) edited by JW Conaway and RC Conaway, in "Transcription Mechanisms and Regulation" Raven Press, New York. Transcription by RNA Polymerase III.