Publications
To see all of Dr. Xu's publications, please see his
Recent Publications
Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J, Mutlu AS, Wang S, Nehring RB, Li X, Tang Q, Li C, Lv X, Dobrolecki LE, Zhang W, Han D, Zhao N, Jaehnig E, Wang J, Wu W, Graham DA, Li Y, Chen R, Peng W, Chen Y, Catic A, Zhang Z, Zhang B, Mustoe AM, Koong AC, Miles G, Lewis MT, Wang MC, Rosenberg SM, O'Malley BW, Westbrook TF, Xu H, Zhang XH, Osborne CK, Li JB, Ellis MJ, Rimawi MF, Rosen JM, Chen X. Cell. 2024 Oct 14; [Epub ahead of print]
Chen S, Hou J, Jaffery R, Guerrero A, Fu R, Shi L, Zheng N, Bohat R, Egan NA, Yu C, Sharif S, Lu Y, He W, Wang S, Gjuka D, Stone EM, Shah PA, Rodon Ahnert J, Chen T, Liu X, Bedford MT, Xu H, Peng W. J Immunother Cancer. 2024 Sep 23;12(9).
Wang Y, Zhou J, He W, Fu R, Shi L, Dang NK, Liu B, Xu H, Cheng X, Bedford MT. Cell Rep. 2024 Jul 23;43(7):114459.
Xuan F, Xuan H, Huang M, He W, Xu H, Shi X, Wen H. J Mol Biol. 2023 Dec 21:168414. doi: 10.1016/j.jmb.2023.168414. Online ahead of print.
Zheng C, Wei Y, Zhang P, Lin K, He D, Teng H, Manyam G, Zhang Z, Liu W, Lee HRL, Tang X, He W, Islam N, Jain A, Chiu Y, Cao S, Diao Y, Meyer-Gauen S, H??k M, Malovannaya A, Li W, Hu M, Wang W, Xu H, Kopetz S, Chen Y. . Nat Struct Mol Biol. 2023 Dec;30(12):1878-1892.
Zhang L, He W, Fu R, Wang S, Chen Y, Xu H. Nucleic Acids Res. 2023 Oct 13;51(18):9880-9893.
Xu L, Xuan H, He W, Zhang L, Huang M, Li K, Wen H, X Hu, Shi X. Nat Commun. 2023 Sep 2;14(1):5362.
Zheng C, Wei Y, Zhang Q, Sun M, Wang Y, Hou J, Zhang P, Lv X, Su D, Jiang Y, Gumin J, Sahni N, Hu B, Wang W, Chen X, McGrail DJ, Zhang C, Huang S, Xu H, Chen J, Lang FF, Hu J, Chen Y. Sci Adv. 2023 Aug 4;9(31):eadf3984.
Zheng C, Wei Y, Zhang P, Xu L, Zhang Z, Lin K, Hou J, Lv X, Ding Y, Chiu Y, Jain A, Islam N, Malovannaya A, Wu Y, Ding F, Xu H, Sun M, Chen X, Chen Y. J Clin Invest. 2023 Mar 1;133(5):e159940.
Srour N, Villarreal OD, Hardikar S, Yu Z, Preston S, Miller WH Jr, Szewczyk MM, Barsyte-Lovejoy D, Xu H, Chen T, Del Rinc¨®n SV, Richard S. . Cell Rep. 2022 Mar 29;38(13):110582.
Fu R#, He W#, Dou J, Villarreal OD, Bedford E, Wang H, Hou C, Zhang L, Wang Y, Ma D, Chen Y, Gao X, Depken M, Xu H. . Nat Commun. 2022 Jan 25;13(1):474 (#equal contributions).
Liao Y, Chen CH, Xiao T, de la Pe?a Avalos B, Dray EV, Cai C, Gao S, Shah N, Zhang Z, Feit A, Xue P, Liu Z, Yang M, Lee JH, Xu H, Li W, Mei S, Pierre RS, Shu S, Fei T, Duarte M, Zhao J, Bradner JE, Polyak K, Kantoff PW, Long H, Balk SP, Liu XS, Brown M, Xu K. . Proc Natl Acad Sci U S A. 2022 Jan 18;119(3):e2105898119.
2017 to 2021
Sun M#, Wang Y#, Zheng C#, Wei Y, Hou J, Zhang P, He W, Lv X, Ding Y, Liang H, Hon CC, Xu H*, Chen Y*. Genome Biol. 2021 Aug 23;22(1):240. (*Co-corresponding authors, #equal contributions)
He W, Wang H, Wei Y, Jiang Z, Tang Y, Chen Y, Xu H. . Bioinformatics. 2021 Jan 04;37(1)1:134-136.
Veazey KJ, Cheng D, Lin K, Villarreal OD, Gao G, Perez-Oquendo M, Van HT, Stratton SA, Green M, Xu H, Lu Y, Bedford MT, Santos MA. Leukemia. 2020 Dec;34(12):3269-3285.
He W, Zhang L, Villarreal OD, Fu R, Bedford E, Dou J, Patel AY, Bedford MT, Shi X, Chen T, Bartholomew B, Xu H. . Nat Commun. 2019 Oct 4;10(1):4541.
Gao G#, Zhang L#, Villarreal OD, He W, Su D, Bedford E, Moh P, Shen J, Shi X, Bedford MT, Xu H. . Nucleic Acids Res. 2019 Jun 4;47(10):5038-5048 (#equal contributions).
Chen CH, Xiao T, Xu H, Jiang P, Meyer CA, Li W, Brown M, Liu XS. Bioinformatics. 2018 Dec 1;34(23):4095-4101.
Xiao T, Li W, Wang X, Xu H, Yang J, Wu Q, Huang Y, Geradts J, Jiang P, Fei T, Chi D, Zang C, Liao Q, Rennhack J, Andrechek E, Li N, Detre S, Dowsett M, Jeselsohn RM, Liu XS, Brown M. Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):7869-7878.
Yan J, Chuai G, Zhou C, Zhu C, Yang J, Zhang C, Gu F, Xu H, Wei J, Liu Q. . Brief Bioinform. 2018 Jul 20;19(4):721-724.
Cao Q, Ma J, Chen CH, Xu H, Chen Z, Li W, Liu XS. . PLoS One. 2017 Sep 5;12(9):e0184281.
Meyers RM, Bryan JG, McFarland JM, Weir BA, Sizemore AE, Xu H, Dharia NV, Montgomery PG, Cowley GS, Pantel S, Goodale A, Lee Y, Ali LD, Jiang G, Lubonja R, Harrington WF, Strickland M, Wu T, Hawes DC, Zhivich VA, Wyatt MR, Kalani Z, Chang JJ, Okamoto M, Stegmaier K, Golub TR, Boehm JS, Vazquez F, Root DE, Hahn WC, Tsherniak A. . Nat Genet. 2017 Dec;49(12):1779-1784.
Rosenbluh J*, Xu H*, Harrington W, Gill S, Wang X, Vazquez F, Root DE, Tsherniak A, Hahn WC. . Nat Commun. 2017 May 23;8:15403 (*co-first author).
Prior to 2017
Ma J, K?ster J, Qin Q, Hu S, Li W, Chen C, Cao Q, Wang J, Mei S, Liu Q, Xu H*, Liu XS*. Bioinformatics 32(21):3336-3338, 11/2016 (*co-corresponding author).
Xu H*, Xu K*, He HH, Zang C, Chen CH, Chen Y, Qin Q, Wang S, Wang C, Hu S, Li F, Long H, Brown M, Liu XS. . Mol Cancer Res 14(2):163-72, 2/2016 (*co-first author).
Xu H*, Xiao T*, Chen CH, Li W, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M, Liu XS. . Genome Res 25(8):1147-57, 8/2015 (*co-first author).
Li W*, Xu H*, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS. . Genome Biol 15(12):554, 2014 (*co-first author).
Handoko L*, Xu H*, Li G*, Ngan CY, Chew E, Schnapp M, Lee CW, Ye C, Ping JL, Mulawadi F, Wong E, Sheng J, Zhang Y, Poh T, Chan CS, Kunarso G, Shahab A, Bourque G, Cacheux-Rataboul V, Sung WK, Ruan Y, Wei CL. . Nat Genet 43(7):630-8, 6/2011 (*co-first author).
Xu H, Handoko L, Wei X, Ye C, Sheng J, Wei CL, Lin F, Sung WK. . Bioinformatics 26(9):1199-204, 5/2010.
Xu H, Wei CL, Lin F, Sung WK. . Bioinformatics 24(20):2344-9, 10/2008.
Chen X*, Xu H*, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, Loh YH, Yeo HC, Yeo ZX, Narang V, Govindarajan KR, Leong B, Shahab A, Ruan Y, Bourque G, Sung WK, Clarke ND, Wei CL, Ng HH. . Cell 133(6):1106-17, 6/2008 (*co-first author).
Zhao XD*, Han X*, Chew JL, Liu J, Chiu KP, Choo A, Orlov YL, Sung WK, Shahab A, Kuznetsov VA, Bourque G, Oh S, Ruan Y, Ng HH, Wei CL. . Cell Stem Cell 1(3):286-98, 9/2007 (*co-first author).